3RBH Transport Protein date Mar 29, 2011
title Structure Of Alginate Export Protein Alge From Pseudomonas A
authors J.C.Whitney, I.D.Hay, C.Li, P.D.Eckford, H.Robinson, M.F.Amaya, L. D.E.Ohman, C.E.Bear, B.H.Rehm, P.L.Howell
compound source
Molecule: Alginate Production Protein Alge
Chain: A, B, C, D
Fragment: Residues 33-490
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Alge, Alg76, Pa3544
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 1 2 1
R_factor 0.221 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.018 90.696 160.279 90.00 107.65 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand C8E, CA, EDO, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis for alginate secretion across the bacterial outer membrane., Whitney JC, Hay ID, Li C, Eckford PD, Robinson H, Amaya MF, Wood LF, Ohman DE, Bear CE, Rehm BH, Lynne Howell P, Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13083-8. Epub 2011 Jul 21. PMID:21778407
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (572 Kb) [Save to disk]
  • Biological Unit Coordinates (3rbh.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (3rbh.pdb2.gz) 147 Kb
  • Biological Unit Coordinates (3rbh.pdb3.gz) 140 Kb
  • Biological Unit Coordinates (3rbh.pdb4.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 3RBH
  • CSU: Contacts of Structural Units for 3RBH
  • Structure Factors (4211 Kb)
  • Retrieve 3RBH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RBH from S2C, [Save to disk]
  • Re-refined 3rbh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RBH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RBH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RBH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rbh_C] [3rbh] [3rbh_A] [3rbh_D] [3rbh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RBH
  • Community annotation for 3RBH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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