3RCJ Transferase Transferase Inhibitor date Mar 31, 2011
title Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic K Inhibitors Via One-Pot Sonogashira Coupling Tms-Deprotectio Sequence
authors U.Graedler, D.Dorsch, E.Merkul, F.Klukas, C.Sirrenberg, H.E.Grein T.J.J.Mueller
compound source
Molecule: 3-Phosphoinositide-Dependent Protein Kinase 1
Chain: A
Fragment: Protein Kinase Domain, Residues 50-359
Synonym: Hpdk1
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdpk1, Pdk1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.217 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.870 44.390 47.100 90.00 101.01 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 3RC, SEP enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRapid preparation of triazolyl substituted NH-heterocyclic kinase inhibitors via one-pot Sonogashira coupling-TMS-deprotection-CuAAC sequence., Merkul E, Klukas F, Dorsch D, Gradler U, Greiner HE, Muller TJ, Org Biomol Chem. 2011 May 31. PMID:21625704
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3rcj.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3RCJ
  • CSU: Contacts of Structural Units for 3RCJ
  • Structure Factors (185 Kb)
  • Retrieve 3RCJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RCJ from S2C, [Save to disk]
  • Re-refined 3rcj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RCJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RCJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RCJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rcj] [3rcj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RCJ: [S_TKc ] by SMART
  • Other resources with information on 3RCJ
  • Community annotation for 3RCJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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