3RDP	Transferase	date	Apr 01, 2011
title	Crystal Structure Of Thymidine Kinase From Herpes Simplex Vi In Complex With N-Methyl-Fhbt
authors	L.Pernot, R.Perozzo, Y.Westermaier, M.Martic, S.Ametamey, L.Scapo
compound		source
Molecule: Thymidine Kinase Chain: A, B Fragment: Unp Residues 46-376 Ec: 2.7.1.21 Engineered: Yes		Organism_scientific: Human Herpesvirus 1 Organism_common: Hhv-1 Organism_taxid: 10299 Strain: Strain 17 Gene: Tk, Ul23 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p2
symmetry	Space Group: C 2 2 21	R_factor 0.200 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 114.187 118.283 108.871 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	NMF, SO4	enzyme	Transferase E.C.2.7.1.21 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Synthesis, crystal structure, and in vitro biological evaluation of C-6 pyrimidine derivatives: new lead structures for monitoring gene expression in vivo., Martic M, Pernot L, Westermaier Y, Perozzo R, Kraljevic TG, Kristafor S, Raic-Malic S, Scapozza L, Ametamey S, Nucleosides Nucleotides Nucleic Acids. 2011 Apr;30(4):293-315. PMID:21623543

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk] Biological Unit Coordinates (3rdp.pdb1.gz) 100 Kb LPC: Ligand-Protein Contacts for 3RDP CSU: Contacts of Structural Units for 3RDP Structure Factors (137 Kb) Retrieve 3RDP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RDP from S2C, [Save to disk] Re-refined 3rdp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RDP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3RDP

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RDP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rdp] [3rdp_B] [3rdp_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3RDP

Community annotation for 3RDP at PDBWiki (http://pdbwiki.org)

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