3REP Cell Adhesion date Apr 04, 2011
title Crystal Structure Of The Ilkalpha-Parvin Core Complex (Mnat
authors K.Fukuda, J.Qin
compound source
Molecule: Integrin-Linked Kinase
Chain: A
Fragment: Pseudokinase Domain, Unp Residues 182-452
Synonym: Ilk
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ilk, Ilk1, Ilk2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_plasmid: Pst39

Molecule: Alpha-Parvin
Chain: B
Fragment: Calponin Homology Domain, Unp Residues 248-372
Synonym: Actopaxin, Ch-Ilkbp, Calponin-Like Integrin-Linked Binding Protein, Matrix-Remodeling-Associated Protein 2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parva, Mxra2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_plasmid: Pst39
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.022 116.280 47.284 90.00 101.53 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ATP, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (3rep.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 3REP
  • CSU: Contacts of Structural Units for 3REP
  • Structure Factors (277 Kb)
  • Retrieve 3REP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3REP from S2C, [Save to disk]
  • Re-refined 3rep structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3REP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3REP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3REP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rep_A] [3rep_B] [3rep]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3REP: [CH] [STYKc ] by SMART
  • Other resources with information on 3REP
  • Community annotation for 3REP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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