3RFU Hydrolase, Membrane Protein date Apr 07, 2011
title Crystal Structure Of A Copper-Transporting Pib-Type Atpase
authors P.Gourdon, X.Liu, T.Skjorringe, J.P.Morth, L.Birk Moller, B.Panye Pedersen, P.Nissen
compound source
Molecule: Copper Efflux Atpase
Chain: A, B, C, D
Ec: 3.6.3.-
Engineered: Yes
Organism_scientific: Legionella Pneumophila Subsp. Pneumoph
Organism_taxid: 272624
Strain: Philadelphia
Gene: Lpg1024
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C43(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 1
R_factor 0.235 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.150 72.980 329.950 89.96 90.04 90.22
method X-Ray Diffractionresolution 3.20 Å
ligand ALF, K, MG enzyme Hydrolase E.C.3.6.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • cation-transporting ATPase a...


  • Primary referenceCrystal structure of a copper-transporting PIB-type ATPase., Gourdon P, Liu XY, Skjorringe T, Morth JP, Moller LB, Pedersen BP, Nissen P, Nature. 2011 Jun 29;475(7354):59-64. doi: 10.1038/nature10191. PMID:21716286
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (785 Kb) [Save to disk]
  • Biological Unit Coordinates (3rfu.pdb1.gz) 198 Kb
  • Biological Unit Coordinates (3rfu.pdb2.gz) 198 Kb
  • Biological Unit Coordinates (3rfu.pdb3.gz) 199 Kb
  • Biological Unit Coordinates (3rfu.pdb4.gz) 199 Kb
  • LPC: Ligand-Protein Contacts for 3RFU
  • CSU: Contacts of Structural Units for 3RFU
  • Structure Factors (594 Kb)
  • Retrieve 3RFU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RFU from S2C, [Save to disk]
  • Re-refined 3rfu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RFU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RFU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RFU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rfu_D] [3rfu] [3rfu_B] [3rfu_A] [3rfu_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RFU
  • Community annotation for 3RFU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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