3RFZ Cell Adhesion Transport Chaperone date Apr 07, 2011
title Crystal Structure Of The Fimd Usher Bound To Its Cognate Fim Substrate
authors G.Phan, H.Remaut, A.Lebedev, S.Geibel, G.Waksman
compound source
Molecule: Type 1 Fimbrial Adhesin
Chain: A, D
Fragment: Unp Residues 22-300
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: B4320, Fimh, Jw4283
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Outer Membrane Usher Protein, Type 1 Fimbrial Syn
Chain: B, E
Fragment: Unp Residues 46-878
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Fimd, Ecb_04186
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Chaperone Protein Fimc
Chain: C, F
Fragment: Unp Residues 37-241
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Fimc, C5395
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.223 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.190 95.900 144.570 90.00 112.13 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand SO4 enzyme
Gene ECB
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B
  • fimbrial usher porin activit...


  • F, C


    Primary referenceCrystal structure of the FimD usher bound to its cognate FimC-FimH substrate., Phan G, Remaut H, Wang T, Allen WJ, Pirker KF, Lebedev A, Henderson NS, Geibel S, Volkan E, Yan J, Kunze MB, Pinkner JS, Ford B, Kay CW, Li H, Hultgren SJ, Thanassi DG, Waksman G, Nature. 2011 Jun 2;474(7349):49-53. PMID:21637253
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (395 Kb) [Save to disk]
  • Biological Unit Coordinates (3rfz.pdb1.gz) 198 Kb
  • Biological Unit Coordinates (3rfz.pdb2.gz) 197 Kb
  • Biological Unit Coordinates (3rfz.pdb3.gz) 389 Kb
  • LPC: Ligand-Protein Contacts for 3RFZ
  • CSU: Contacts of Structural Units for 3RFZ
  • Structure Factors (1227 Kb)
  • Retrieve 3RFZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RFZ from S2C, [Save to disk]
  • Re-refined 3rfz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RFZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RFZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RFZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rfz_B] [3rfz] [3rfz_F] [3rfz_A] [3rfz_D] [3rfz_C] [3rfz_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RFZ
  • Community annotation for 3RFZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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