3RG6 Photosynthesis date Apr 07, 2011
title Crystal Structure Of A Chaperone-Bound Assembly Intermediate Rubisco
authors A.Bracher, A.Starling-Windhof, F.U.Hartl, M.Hayer-Hartl
compound source
Molecule: Ribulose Bisphosphate Carboxylase Large Chain
Chain: A, B
Synonym: Rubisco Large Subunit
Ec: 4.1.1.39
Engineered: Yes
Organism_scientific: Synechococcus Elongatus
Organism_taxid: 269084
Strain: Atcc 27144 Pcc 6301 Saug 14021
Gene: Cbbl, Rbca, Rbcl, Syc0130_c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a

Molecule: Rbcx Protein
Chain: C, D, E, F
Engineered: Yes

Organism_scientific: Anabaena Sp.
Organism_taxid: 1167
Gene: Rbcx
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: I 4
R_factor 0.216 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
244.750 244.750 99.669 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand
enzyme Lyase E.C.4.1.1.39 BRENDA
Gene SYC0130 (C. caroliniana)
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, D, C, E


Primary referenceCrystal structure of a chaperone-bound assembly intermediate of form I Rubisco., Bracher A, Starling-Windhof A, Hartl FU, Hayer-Hartl M, Nat Struct Mol Biol. 2011 Jul 17. doi: 10.1038/nsmb.2090. PMID:21765418
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (429 Kb) [Save to disk]
  • Biological Unit Coordinates (3rg6.pdb1.gz) 1672 Kb
  • CSU: Contacts of Structural Units for 3RG6
  • Structure Factors (1910 Kb)
  • Retrieve 3RG6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RG6 from S2C, [Save to disk]
  • Re-refined 3rg6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RG6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RG6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RG6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rg6] [3rg6_F] [3rg6_C] [3rg6_E] [3rg6_D] [3rg6_B] [3rg6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RG6
  • Community annotation for 3RG6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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