3RGX Transferase date Apr 11, 2011
title Structural Insight Into Brassinosteroid Perception By Bri1
authors J.Chai, Z.Han, J.She, J.Wang, W.Cheng, J.Wang
compound source
Molecule: Protein Brassinosteroid Insensitive 1
Chain: A
Fragment: Unp Residues 23-784
Synonym: Bri1, Atbri1, Brassinosteroid Lrr Receptor Kinase
Ec: 2.7.10.1, 2.7.11.1
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress,Thale-Cress
Organism_taxid: 3702
Gene: Bri1, At4g39400, F23k16.30
Expression_system_cell_line: High-5
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac 1
Other_details: Invitrogentm
symmetry Space Group: C 1 2 1
R_factor 0.199 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.391 66.705 119.051 90.00 120.98 90.00
method X-Ray Diffractionresolution 2.47 Å
ligand NAG enzyme Transferase E.C.2.7.10.1 BRENDA
Primary referenceStructural insight into brassinosteroid perception by BRI1., She J, Han Z, Kim TW, Wang J, Cheng W, Chang J, Shi S, Wang J, Yang M, Wang ZY, Chai J, Nature. 2011 Jun 12;474(7352):472-6. doi: 10.1038/nature10178. PMID:21666666
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (3rgx.pdb1.gz) 237 Kb
  • LPC: Ligand-Protein Contacts for 3RGX
  • CSU: Contacts of Structural Units for 3RGX
  • Structure Factors (357 Kb)
  • Retrieve 3RGX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RGX from S2C, [Save to disk]
  • Re-refined 3rgx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RGX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RGX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RGX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rgx] [3rgx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RGX: [LRR ] by SMART
  • Other resources with information on 3RGX
  • Community annotation for 3RGX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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