3RH5	Transferase Dna	date	Apr 11, 2011
title	Dna Polymerase Beta Mutant (Y271) With A Dideoxy-Terminated With An Incoming Deoxynucleotide (Dctp)
authors	N.A.Cavanaugh, W.A.Beard, V.K.Batra, L.Perera, L.G.Pedersen, S.H.
compound		source
Molecule: Dna Polymerase Beta Chain: A Ec: 2.7.7.7, 4.2.99.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Polb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Tap56 Expression_system_vector_type: Pwl11
Molecule: 5'-D(Cpcpgpapcpgpcpcpgpcpaptpcpapg Chain: T Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Gpcptpgpaptpgpcpgp(Ddg))-3' Chain: P Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Pgptpcpgpg)-3' Chain: D Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 1 21 1	R_factor 0.208 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.220 79.920 55.090 90.00 107.93 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CL, DCP, DDG, MN, NA	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Molecular insights into DNA polymerase deterrents for Ribonucleotide insertion., Cavanaugh NA, Beard WA, Batra VK, Perera L, Pedersen LG, Wilson SH, J Biol Chem. 2011 Jul 6. PMID:21733843

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (3rh5.pdb1.gz) 72 Kb LPC: Ligand-Protein Contacts for 3RH5 CSU: Contacts of Structural Units for 3RH5 Structure Factors (329 Kb) Retrieve 3RH5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RH5 from S2C, [Save to disk] Re-refined 3rh5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RH5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3RH5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RH5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rh5_A] [3rh5] [3rh5_D] [3rh5_P] [3rh5_T] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3RH5: [HhH1] [POLXc ] by SMART

Other resources with information on 3RH5

Community annotation for 3RH5 at PDBWiki (http://pdbwiki.org)

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