3RHT Structural Genomics, Unknown Function date Apr 12, 2011
title Crystal Structure Of Type 1 Glutamine Amidotransferase (Gata Protein From Planctomyces Limnophilus
authors K.Michalska, H.Li, J.Bearden, A.Joachimiak, Midwest Center For S Genomics (Mcsg)
compound source
Molecule: (Gatase1)-Like Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Planctomyces Limnophilus
Organism_taxid: 521674
Strain: Dsm 3776
Gene: Plim_2614
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 1 21 1
R_factor 0.158 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.287 126.827 101.964 90.00 96.60 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand ACT, CA, CL, GOL, MSE, NA enzyme
Gene PLIM
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (361 Kb) [Save to disk]
  • Biological Unit Coordinates (3rht.pdb1.gz) 177 Kb
  • Biological Unit Coordinates (3rht.pdb2.gz) 178 Kb
  • LPC: Ligand-Protein Contacts for 3RHT
  • CSU: Contacts of Structural Units for 3RHT
  • Structure Factors (3925 Kb)
  • Retrieve 3RHT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RHT from S2C, [Save to disk]
  • Re-refined 3rht structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3RHT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3RHT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RHT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rht_D] [3rht_A] [3rht_C] [3rht] [3rht_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3RHT
  • Community annotation for 3RHT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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