3RI1 Transferase Transferase Inhibitor date Apr 12, 2011
title Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In With Arq 069
authors S.Eathiraj, R.Palma, M.Hirschi, E.Volckova, E.Nakuci, J.Castro, C. T.C.Chan, D.S.France, M.A.Ashwell
compound source
Molecule: Fibroblast Growth Factor Receptor 2
Chain: A, B
Fragment: Unp Residues 458-768
Synonym: Fgfr-2, K-Sam, Keratinocyte Growth Factor Receptor
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgfr2, Bek, Kgfr, Ksam
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Codon Plus Bl21(De3)-Rilp
Expression_system_vector_type: Pet
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 2
R_factor 0.214 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.794 119.581 63.311 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 3RH, SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA novel mode of protein kinase inhibition exploiting hydrophobic motifs of auto-inhibited kinases: discovery of ATP independent inhibitors of fibroblast growth factor receptor (FGFR)., Eathiraj S, Palma R, Hirschi M, Volckova E, Nakuci E, Castro J, Chen CR, Chan TC, France DS, Ashwell MA, J Biol Chem. 2011 Mar 24. PMID:21454610
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (3ri1.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (3ri1.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3RI1
  • CSU: Contacts of Structural Units for 3RI1
  • Structure Factors (704 Kb)
  • Retrieve 3RI1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RI1 from S2C, [Save to disk]
  • Re-refined 3ri1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RI1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RI1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RI1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ri1_B] [3ri1] [3ri1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RI1: [TyrKc ] by SMART
  • Other resources with information on 3RI1
  • Community annotation for 3RI1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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