3RLB Thiamine-Binding Protein date Apr 19, 2011
title Crystal Structure At 2.0 A Of The S-Component For Thiamin Fr Type Abc Transporter
authors G.B.Erkens, R.P.A.Berntsson, F.Fulyani, M.Majsnerowska, A.Vujic J.Ter Beek, B.Poolman, D.J.Slotboom
compound source
Molecule: Thit
Chain: A, B
Engineered: Yes
Organism_scientific: Lactococcus Lactis Subsp. Cremoris
Organism_taxid: 746361
Strain: Nz9000
Gene: Llnz_01755
Expression_system: Lactococcus Lactis Subsp. Cremoris
Expression_system_taxid: 746361
Expression_system_strain: Nz9000
symmetry Space Group: C 1 2 1
R_factor 0.206 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.654 84.654 127.301 90.00 95.81 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BNG, VIB enzyme
Gene LLNZ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structural basis of modularity in ECF-type ABC transporters., Erkens GB, Berntsson RP, Fulyani F, Majsnerowska M, Vujicic-Zagar A, Ter Beek J, Poolman B, Slotboom DJ, Nat Struct Mol Biol. 2011 Jun 26;18(7):755-60. doi: 10.1038/nsmb.2073. PMID:21706007
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (3rlb.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (3rlb.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3RLB
  • CSU: Contacts of Structural Units for 3RLB
  • Structure Factors (633 Kb)
  • Retrieve 3RLB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RLB from S2C, [Save to disk]
  • Re-refined 3rlb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RLB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RLB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RLB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rlb_A] [3rlb_B] [3rlb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RLB
  • Community annotation for 3RLB at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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