3RPE Oxidoreductase date Apr 26, 2011
title 1.1 Angstrom Crystal Structure Of Putative Modulator Of Drug (Mdab) From Yersinia Pestis Co92.
authors G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, L.Papa W.F.Anderson, Center For Structural Genomics Of Infectious D (Csgid)
compound source
Molecule: Modulator Of Drug Activity B
Chain: A, B
Synonym: Mdab
Engineered: Yes
Organism_scientific: Yersinia Pestis
Organism_taxid: 632
Strain: Co92
Gene: Mda66, Mdab, Mdab3, Y3509, Ypo0670, Yp_2985
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Krx
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 32
R_factor 0.100 R_Free 0.117
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.497 66.497 76.208 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.10 Å
ligand FAD, PEG enzyme
Gene YP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (3rpe.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 3RPE
  • CSU: Contacts of Structural Units for 3RPE
  • Structure Factors (2375 Kb)
  • Retrieve 3RPE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RPE from S2C, [Save to disk]
  • Re-refined 3rpe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RPE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RPE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RPE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rpe] [3rpe_A] [3rpe_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RPE
  • Community annotation for 3RPE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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