3RRO Oxidoreductase date Apr 29, 2011
title Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reduc (Fabg) From Vibrio Cholerae
authors J.Hou, M.Chruszcz, D.R.Cooper, M.Grabowski, H.Zheng, T.Osinski, I. W.Anderson, W.Minor, Center For Structural Genomics Of Infect Diseases (Csgid)
compound source
Molecule: 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase
Chain: A, B
Ec: 1.1.1.100
Engineered: Yes
Organism_scientific: Vibrio Cholerae O1 Biovar El Tor
Organism_taxid: 243277
Strain: N16961
Gene: Vcd_002346
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codonplus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 62
R_factor 0.139 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.939 63.939 190.146 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, EDO, GOL, PGE, SO4 enzyme Oxidoreductase E.C.1.1.1.100 BRENDA
Gene VCD
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDissecting the structural elements for the activation of beta-ketoacyl-(acyl carrier protein) reductase from Vibrio cholerae., Hou J, Zheng H, Chruszcz M, Zimmerman MD, Shumilin IA, Osinski T, Demas M, Grimshaw S, Minor W, J Bacteriol. 2015 Nov 9. pii: JB.00360-15. PMID:26553852
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (3rro.pdb1.gz) 306 Kb
  • LPC: Ligand-Protein Contacts for 3RRO
  • CSU: Contacts of Structural Units for 3RRO
  • Structure Factors (627 Kb)
  • Retrieve 3RRO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RRO from S2C, [Save to disk]
  • Re-refined 3rro structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RRO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RRO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RRO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rro_A] [3rro_B] [3rro]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RRO
  • Community annotation for 3RRO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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