3RRP Lyase date Apr 29, 2011
title Crystal Structure Of Fumarate Hydratase Fum From Mycobacteri Abscessus With Malate Bound
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Probable Fumarate Hydratase Fum
Chain: A, B
Engineered: Yes
Organism_scientific: Mycobacterium Abscessus
Organism_taxid: 561007
Strain: Atcc 19977 Dsm 44196
Gene: Mab_1250c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pava0421
symmetry Space Group: P 21 21 2
R_factor 0.160 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.800 156.920 57.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand EDO, LMR enzyme
Gene MAB
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIncreasing the structural coverage of tuberculosis drug targets., Baugh L, Phan I, Begley DW, Clifton MC, Armour B, Dranow DM, Taylor BM, Muruthi MM, Abendroth J, Fairman JW, Fox D 3rd, Dieterich SH, Staker BL, Gardberg AS, Choi R, Hewitt SN, Napuli AJ, Myers J, Barrett LK, Zhang Y, Ferrell M, Mundt E, Thompkins K, Tran N, Lyons-Abbott S, Abramov A, Sekar A, Serbzhinskiy D, Lorimer D, Buchko GW, Stacy R, Stewart LJ, Edwards TE, Van Voorhis WC, Myler PJ, Tuberculosis (Edinb). 2014 Dec 19. pii: S1472-9792(14)20565-8. doi:, 10.1016/j.tube.2014.12.003. PMID:25613812
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • Biological Unit Coordinates (3rrp.pdb1.gz) 533 Kb
  • LPC: Ligand-Protein Contacts for 3RRP
  • CSU: Contacts of Structural Units for 3RRP
  • Structure Factors (601 Kb)
  • Retrieve 3RRP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RRP from S2C, [Save to disk]
  • Re-refined 3rrp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RRP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RRP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RRP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rrp_B] [3rrp_A] [3rrp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RRP
  • Community annotation for 3RRP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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