3RU0	Transferase Transferase Inhibitor	date	May 04, 2011
title	Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin
authors	K.W.Foreman, M.Brown, F.Park, S.Emtage, J.Harriss, C.Das, L.Zhu, A. L.Arnold, S.Shaaban, P.Tucker
compound		source
Molecule: Set And Mynd Domain-Containing Protein 3 Chain: A, B Synonym: Zinc Finger Mynd Domain-Containing Protein 1 Ec: 2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smyd3, Zmynd1, Znfn3a1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: P 1 21 1	R_factor 0.200 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.175 118.073 82.901 90.00 91.58 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	SFG, ZN	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural and Functional Profiling of the Human Histone Methyltransferase SMYD3., Foreman KW, Brown M, Park F, Emtage S, Harriss J, Das C, Zhu L, Crew A, Arnold L, Shaaban S, Tucker P, PLoS One. 2011;6(7):e22290. Epub 2011 Jul 14. PMID:21779408

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk] Biological Unit Coordinates (3ru0.pdb1.gz) 73 Kb Biological Unit Coordinates (3ru0.pdb2.gz) 70 Kb LPC: Ligand-Protein Contacts for 3RU0 CSU: Contacts of Structural Units for 3RU0 Structure Factors (690 Kb) Retrieve 3RU0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RU0 from S2C, [Save to disk] Re-refined 3ru0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RU0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3RU0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RU0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ru0_B] [3ru0_A] [3ru0] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3RU0: [SET ] by SMART

Other resources with information on 3RU0

Community annotation for 3RU0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---