3RVF	Transcription Regulator	date	May 06, 2011
title	Fxr With Src1 And Gsk2034
authors	S.P.Williams, K.P.Madauss
compound		source
Molecule: Bile Acid Receptor Chain: A Fragment: Ligand Binding Domain (Unp Residues 257-486) Synonym: Fxr, Farnesoid X-Activated Receptor, Farnesol Rece 1, Nuclear Receptor Subfamily 1 Group H Member 4, Retinoid Receptor-Interacting Protein 14, Rxr-Interacting Protein 14 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bar, Fxr, Hrr1, Nr1h4, Rip14 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prseta
Molecule: Nuclear Receptor Coactivator 1 Chain: B Fragment: Unp Residues 741-761 Synonym: Src1, Ncoa-1, Class E Basic Helix-Loop-Helix Prote Bhlhe74, Protein Hin-2, Rip160, Renal Carcinoma Antigen Ny- Steroid Receptor Coactivator 1; Ec: 2.3.1.48 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: F 2 3	R_factor 0.223 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 158.331 158.331 158.331 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	034, SO4 BindingDB	enzyme	Transferase E.C.2.3.1.48 BRENDA
Primary reference	Conformationally constrained farnesoid X receptor (FXR) agonists: Alternative replacements of the stilbene., Akwabi-Ameyaw A, Caravella JA, Chen L, Creech KL, Deaton DN, Madauss KP, Marr HB, Miller AB, Navas F 3rd, Parks DJ, Spearing PK, Todd D, Williams SP, Wisely GB, Bioorg Med Chem Lett. 2011 Aug 11. PMID:21890356

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (3rvf.pdb1.gz) 39 Kb LPC: Ligand-Protein Contacts for 3RVF CSU: Contacts of Structural Units for 3RVF Structure Factors (149 Kb) Retrieve 3RVF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RVF from S2C, [Save to disk] Re-refined 3rvf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RVF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3RVF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RVF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rvf_B] [3rvf] [3rvf_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3RVF: [HOLI ] by SMART

Other resources with information on 3RVF

Community annotation for 3RVF at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---