3RVI Hydrolase Hydrolase Inhibitor date May 06, 2011
title Structure Of Bace-1 (Beta-Secretase) In Complex With 2-((2-A Tolylquinolin-3-Yl)Methyl)-N-(Cyclohexylmethyl)Pentanamide
authors E.A.Sickmier
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Unp Residues 43-453
Synonym: Aspartyl Protease 2, Asp2, Asp 2, Beta-Site Amyloi Precursor Protein Cleaving Enzyme 1, Beta-Site App Cleaving Memapsin-2, Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.221 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.124 103.124 170.326 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.65 Å
ligand GOL, IOD, RVI enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFrom Fragment Screening to In Vivo Efficacy: Optimization of a Series of 2-Aminoquinolines as Potent Inhibitors of Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 (BACE1)., Cheng Y, Judd TC, Bartberger MD, Brown J, Chen K, Fremeau RT, Hickman D, Hitchcock SA, Jordan B, Li V, Lopez P, Louie SW, Luo Y, Michelsen K, Nixey T, Powers TS, Rattan C, Sickmier EA, St Jean DJ, Wahl RC, Wen PH, Wood S, J Med Chem. 2011 Aug 25;54(16):5836-57. Epub 2011 Jul 29. PMID:21707077
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (3rvi.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 3RVI
  • CSU: Contacts of Structural Units for 3RVI
  • Structure Factors (238 Kb)
  • Retrieve 3RVI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RVI from S2C, [Save to disk]
  • Re-refined 3rvi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RVI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RVI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RVI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3rvi_A] [3rvi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3RVI
  • Community annotation for 3RVI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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