3RYE	Transferase	date	May 11, 2011
title	Human Fdps Synthase In Complex With A N-Methyl Pyridinum Bisphosphonate
authors	A.G.Evdokimov, B.L.Barnett, F.H.Ebetino, M.Pokross
compound		source
Molecule: Farnesyl Pyrophosphate Synthase Chain: A Synonym: Fpp Synthase, Fps, (2e,6e)-Farnesyl Diphosphate Sy Dimethylallyltranstransferase, Farnesyl Diphosphate Synthas Geranyltranstransferase; Ec: 2.5.1.10, 2.5.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fdps, Fps, Kiaa1293 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: P11
symmetry	Space Group: P 41 21 2	R_factor 0.185 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.311 111.311 69.713 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	MG, SO4, UNR BindingDB	enzyme	Transferase E.C.2.5.1.10 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (3rye.pdb1.gz) 116 Kb LPC: Ligand-Protein Contacts for 3RYE CSU: Contacts of Structural Units for 3RYE Structure Factors (375 Kb) Retrieve 3RYE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3RYE from S2C, [Save to disk] Re-refined 3rye structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3RYE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3RYE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3RYE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3rye] [3rye_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3RYE

Community annotation for 3RYE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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