3RYV Lyase date May 11, 2011
title Carbonic Anhydrase Complexed With N-Ethyl-4-Sulfamoylbenzami
authors P.W.Snyder, S.Bai, A.Heroux, G.W.Whitesides
compound source
Molecule: Carbonic Anhydrase 2
Chain: B
Synonym: Carbonate Dehydratase II, Carbonic Anhydrase C, Ca Carbonic Anhydrase II, Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.133 R_Free 0.168
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.390 41.440 72.060 90.00 104.70 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand RYV, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceFluoroalkyl and Alkyl Chains Have Similar Hydrophobicities in Binding to the ''Hydrophobic Wall'' of Carbonic Anhydrase., Mecinovic J, Snyder PW, Mirica KA, Bai S, Mack ET, Kwant RL, Moustakas DT, Heroux A, Whitesides GM, J Am Chem Soc. 2011 Jul 26. PMID:21790183
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (3ryv.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 3RYV
  • CSU: Contacts of Structural Units for 3RYV
  • Structure Factors (1066 Kb)
  • Retrieve 3RYV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3RYV from S2C, [Save to disk]
  • Re-refined 3ryv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3RYV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3RYV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3RYV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ryv] [3ryv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3RYV: [Carb_anhydrase ] by SMART
  • Other resources with information on 3RYV
  • Community annotation for 3RYV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science