3S0N Hydrolase Hydrolase Inhibitor date May 13, 2011
title Crystal Structure Of Human Chymase With Benzimidazolone Inhi
authors K.C.Qian, N.A.Farrow, A.K.Padyana
compound source
Molecule: Chymase
Chain: A
Fragment: Unp Residues 22-247
Synonym: Alpha-Chymase, Mast Cell Protease I
Ec: 3.4.21.39
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cma1, Cyh, Cym
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 43
R_factor 0.193 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.830 73.830 48.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand 0BB, NAG, ZN BindingDB enzyme Hydrolase E.C.3.4.21.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBenzimidazolone as potent chymase inhibitor: Modulation of reactive metabolite formation in the hydrophobic (P(1)) region., Lo HY, Nemoto PA, Kim JM, Hao MH, Qian KC, Farrow NA, Albaugh DR, Fowler DM, Schneiderman RD, Michael August E, Martin L, Hill-Drzewi M, Pullen SS, Takahashi H, De Lombaert S, Bioorg Med Chem Lett. 2011 Aug 1;21(15):4533-9. Epub 2011 Jun 17. PMID:21733690
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3s0n.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3S0N
  • CSU: Contacts of Structural Units for 3S0N
  • Structure Factors (252 Kb)
  • Retrieve 3S0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S0N from S2C, [Save to disk]
  • Re-refined 3s0n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S0N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S0N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s0n_A] [3s0n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3S0N: [Tryp_SPc ] by SMART
  • Other resources with information on 3S0N
  • Community annotation for 3S0N at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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