3S37	Immune System Transferase	date	May 17, 2011
title	Structural Basis For The Function Of Two Anti-Vegf Receptor
authors	M.C.Franklin
compound		source
Molecule: 1121b Fab Light Chain Chain: L Engineered: Yes		Organism_scientific: Mus Musculus, Homo Sapiens Organism_common: Mouse, Human Organism_taxid: 10090, 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Mammalian Kidney Cells Hek293
Molecule: 1121b Fab Heavy Chain Chain: H Engineered: Yes		Organism_scientific: Mus Musculus, Homo Sapiens Organism_common: Mouse, Human Organism_taxid: 10090, 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Mammalian Kidney Cells Hek293
Molecule: Vascular Endothelial Growth Factor Receptor 2 Chain: X Fragment: Domain 3 Of Vegf Receptor 2, Unp Residues 220-338 Synonym: Vegfr-2, Fetal Liver Kinase 1, Flk-1, Kinase Inser Receptor, Protein-Tyrosine Kinase Receptor Flk-1; Ec: 2.7.10.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Flk1, Kdr Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Hi5
symmetry	Space Group: P 43 21 2	R_factor 0.282 R_Free 0.315
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.684 63.684 275.028 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand		enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component X
Primary reference	The Structural Basis for the Function of Two Anti-VEGF Receptor 2 Antibodies., Franklin MC, Navarro EC, Wang Y, Patel S, Singh P, Zhang Y, Persaud K, Bari A, Griffith H, Shen L, Balderes P, Kussie P, Structure. 2011 Aug 10;19(8):1097-107. PMID:21827946

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk] Biological Unit Coordinates (3s37.pdb1.gz) 173 Kb CSU: Contacts of Structural Units for 3S37 Structure Factors (239 Kb) Retrieve 3S37 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3S37 from S2C, [Save to disk] Re-refined 3s37 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3S37 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3S37

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3S37, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3s37_H] [3s37_X] [3s37] [3s37_L] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3S37: [IG] [IG_like] [IGv ] by SMART

Other resources with information on 3S37

Community annotation for 3S37 at PDBWiki (http://pdbwiki.org)

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