3S3F	Hydrolase Hydrolase Inhibitor	date	May 18, 2011
title	Crystal Structure Of The Catalytic Domain Of Ptp10d From Dro Melanogaster With A Small Molecule Inhibitor Vanadate
authors	L.L.Madan, B.Gopal
compound		source
Molecule: Tyrosine-Protein Phosphatase 10d Chain: A, B Fragment: Unp Residues 1250-1533 Synonym: Receptor-Linked Protein-Tyrosine Phosphatase 10d, Ec: 3.1.3.48 Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Cg1817, Ptp10d Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 31 2 1	R_factor 0.238 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.070 103.070 173.401 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	1BO, BU1, IPA, VO4	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Conformational Basis for Substrate Recruitment in Protein Tyrosine Phosphatase 10D., Madan LL, Gopal B, Biochemistry. 2011 Oct 27. PMID:22007620

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk] Biological Unit Coordinates (3s3f.pdb1.gz) 97 Kb Biological Unit Coordinates (3s3f.pdb2.gz) 97 Kb LPC: Ligand-Protein Contacts for 3S3F CSU: Contacts of Structural Units for 3S3F Structure Factors (453 Kb) Retrieve 3S3F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3S3F from S2C, [Save to disk] Re-refined 3s3f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3S3F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3S3F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3S3F, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3s3f_A] [3s3f] [3s3f_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3S3F: [PTPc ] by SMART

Other resources with information on 3S3F

Community annotation for 3S3F at PDBWiki (http://pdbwiki.org)

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