3S3J Transferase Transferase Inhibitor date May 18, 2011
title Transglutaminase 2 In Complex With A Novel Inhibitor
authors I.Lindemann, A.Heine, G.Klebe
compound source
Molecule: Protein-Glutamine Gamma-Glutamyltransferase 2
Chain: A
Fragment: Unp Residues 2-687
Synonym: Tissue Transglutaminase, Transglutaminase C, Tg(C) Tgase C, Transglutaminase H, Tgase H, Transglutaminase-2, T
Ec: 2.3.2.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgm2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Peptide Inhibitor
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 41 21 2
R_factor 0.215 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.470 72.470 316.461 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand 02Y, GOL, PHQ, SO4 enzyme Transferase E.C.2.3.2.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • negative regulation of endop...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (3s3j.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 3S3J
  • CSU: Contacts of Structural Units for 3S3J
  • Structure Factors (497 Kb)
  • Retrieve 3S3J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S3J from S2C, [Save to disk]
  • Re-refined 3s3j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S3J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S3J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S3J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s3j_A] [3s3j_B] [3s3j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3S3J: [TGc ] by SMART
  • Other resources with information on 3S3J
  • Community annotation for 3S3J at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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