3S6D Isomerase date May 25, 2011
title Crystal Structure Of A Putative Triosephosphate Isomerase Fr Coccidioides Immitis
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Putative Triosephosphate Isomerase
Chain: A
Synonym: Tim, Triose-Phosphate Isomerase
Ec: 5.3.1.1
Engineered: Yes
Organism_scientific: Coccidioides Immitis Rs
Organism_common: Valley Fever Fungus
Organism_taxid: 246410
Strain: Rs
Gene: Cimg_07933
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pava0421
symmetry Space Group: P 21 21 2
R_factor 0.190 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.070 42.460 50.210 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand NA enzyme Isomerase E.C.5.3.1.1 BRENDA
Gene CIMG
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3s6d.pdb1.gz) 163 Kb
  • LPC: Ligand-Protein Contacts for 3S6D
  • CSU: Contacts of Structural Units for 3S6D
  • Structure Factors (209 Kb)
  • Retrieve 3S6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S6D from S2C, [Save to disk]
  • Re-refined 3s6d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S6D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S6D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s6d] [3s6d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3S6D
  • Community annotation for 3S6D at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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