3S90 Cell Adhesion date May 31, 2011
title Human Vinculin Head Domain Vh1 (Residues 1-252) In Complex W Talin (Vbs33; Residues 1512-1546)
authors S.D.Yogesha, A.Sharff, G.Bricogne, T.Izard
compound source
Molecule: Vinculin
Chain: A, B
Fragment: Unp Residues 1-252
Synonym: Metavinculin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vcl
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Talin-1
Chain: C, D
Fragment: Unp Residues 1512-1546
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Tln1, Tln
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.186 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.830 61.180 71.420 83.27 79.05 69.79
method X-Ray Diffractionresolution 1.97 Å
note 3S90 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceIntermolecular versus intramolecular interactions of the vinculin binding site 33 of talin., Yogesha SD, Sharff A, Bricogne G, Izard T, Protein Sci. 2011 Jun 6. doi: 10.1002/pro.671. PMID:21648001
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (3s90.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (3s90.pdb2.gz) 96 Kb
  • CSU: Contacts of Structural Units for 3S90
  • Structure Factors (1088 Kb)
  • Retrieve 3S90 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3S90 from S2C, [Save to disk]
  • Re-refined 3s90 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3S90 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3S90
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3S90, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3s90_A] [3s90_D] [3s90_C] [3s90] [3s90_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3S90
  • Community annotation for 3S90 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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