3SBO Oxidoreductase date Jun 06, 2011
title Structure Of E.Coli Gdh From Native Source
authors C.L.Gee, C.Zubieta, N.Echols, M.Totir
compound source
Molecule: Nadp-Specific Glutamate Dehydrogenase
Chain: A, B, C, D, E, F
Synonym: Nadp-Gdh
Ec: 1.4.1.4
Organism_scientific: Escherichia Coli
Organism_taxid: 668369
Strain: Dh5alpha
symmetry Space Group: P 21 21 21
R_factor 0.229 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.922 151.617 169.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand CL enzyme Oxidoreductase E.C.1.4.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceMacro-to-Micro Structural Proteomics: Native Source Proteins for High-Throughput Crystallization., Totir M, Echols N, Nanao M, Gee CL, Moskaleva A, Gradia S, Iavarone AT, Berger JM, May AP, Zubieta C, Alber T, PLoS One. 2012;7(2):e32498. Epub 2012 Feb 29. PMID:22393408
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (770 Kb) [Save to disk]
  • Biological Unit Coordinates (3sbo.pdb1.gz) 762 Kb
  • LPC: Ligand-Protein Contacts for 3SBO
  • CSU: Contacts of Structural Units for 3SBO
  • Structure Factors (712 Kb)
  • Retrieve 3SBO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SBO from S2C, [Save to disk]
  • Re-refined 3sbo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SBO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SBO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sbo_C] [3sbo_B] [3sbo] [3sbo_A] [3sbo_D] [3sbo_E] [3sbo_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SBO: [ELFV_dehydrog ] by SMART
  • Other resources with information on 3SBO
  • Community annotation for 3SBO at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science