3SCN Hydrolase date Jun 08, 2011
title Crystal Structure Of Rice Bglu1 E386g Mutant
authors S.Pengthaisong, S.G.Withers, B.Kuaprasert, J.R.Ketudat Cairns
compound source
Molecule: Beta-Glucosidase 7
Chain: A, B
Synonym: Os3bglu7
Ec: 3.2.1.21
Engineered: Yes
Mutation: Yes
Organism_scientific: Oryza Sativa Japonica Group
Organism_common: Japanese Rice
Organism_taxid: 39947
Strain: Orion
Gene: Bglu1, Bglu7, Loc_os03g49600, Os03g0703000, Os3bglu7, Osjnba0004l11.16;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a(+)
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.382 100.828 127.415 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MES, SO4, ZN enzyme Hydrolase E.C.3.2.1.21 BRENDA
Gene LOC
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (3scn.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (3scn.pdb2.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 3SCN
  • CSU: Contacts of Structural Units for 3SCN
  • Structure Factors (802 Kb)
  • Retrieve 3SCN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SCN from S2C, [Save to disk]
  • Re-refined 3scn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SCN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SCN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SCN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3scn] [3scn_A] [3scn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SCN
  • Community annotation for 3SCN at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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