3SDP Oxidoreductase (Superoxide Acceptor) date May 06, 1991
title The 2.1 Angstroms Resolution Structure Of Iron Superoxide Di From Pseudomonas Ovalis
authors B.L.Stoddard, D.Ringe, G.A.Petsko
compound source
Molecule: Iron Superoxide Dismutase
Chain: A, B
Ec: 1.15.1.1
Engineered: Yes
 Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.900 49.100 61.700 90.00 106.80 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FE enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
note 3SDP (Molecule of the Month:pdb94)
related structures by homologous chain: 1DT0
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe 2.1-A resolution structure of iron superoxide dismutase from Pseudomonas ovalis., Stoddard BL, Howell PL, Ringe D, Petsko GA, Biochemistry 1990 Sep 25;29(38):8885-93. PMID:2271564
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3sdp.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3SDP
  • CSU: Contacts of Structural Units for 3SDP
  • Likely Quarternary Molecular Structure file(s) for 3SDP
  • Retrieve 3SDP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SDP from S2C, [Save to disk]
    • View 3SDP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3SDP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SDP, from MSDmotif at EBI
  • Genome occurence of 3SDP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3sdpa1, region A:5-83 [Jmol] [rasmolscript] [script source]
        - Domain d3sdpa2, region A:84-190 [Jmol] [rasmolscript] [script source]
        - Domain d3sdpb1, region B:5-83 [Jmol] [rasmolscript] [script source]
        - Domain d3sdpb2, region B:84-190 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sdp] [3sdp_B] [3sdp_A]
  • SWISS-PROT database: [P09223]
  • Domain organization of [SODF_PSEPU] by SWISSPFAM
    • Other resources with information on 3SDP
  • Community annotation for 3SDP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 3SDP from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science