3SJX Hydrolase Hydrolase Inhibitor date Jun 22, 2011
title X-Ray Structure Of Human Glutamate Carboxypeptidase II (The Inactive Mutant) In Complex With N-Acetyl-Aspartyl-Methioni
authors A.Plechanovova, Y.Byun, G.Alquicer, L.Skultetyova, P.Mlcochova, A H.Kim, M.Navratil, R.Mease, J.Lubkowski, M.Pomper, J.Konvalinka, L.Rulisek, C.Barinka
compound source
Molecule: Glutamate Carboxypeptidase 2
Chain: A
Synonym: Cell Growth-Inhibiting Gene 27 Protein, Folate Hyd Folylpoly-Gamma-Glutamate Carboxypeptidase, Fgcp, Glutamate Carboxypeptidase II, Gcpii, Membrane Glutamate Carboxypepti Mgcp, N-Acetylated-Alpha-Linked Acidic Dipeptidase I, Naala Prostate-Specific Membrane Antigen, Psm, Psma, Pteroylpoly- Glutamate Carboxypeptidase;
Ec: 3.4.17.21
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Folh1, Folh, Naalad1, Psm, Psma, Gig27
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_cell_line: Schneider'S S2 Cells
symmetry Space Group: I 2 2 2
R_factor 0.180 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.539 129.937 159.194 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.66 Å
ligand BMA, CA, CL, MAN, NAG, QRG, ZN enzyme Hydrolase E.C.3.4.17.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNovel substrate-based inhibitors of human glutamate carboxypeptidase II with enhanced lipophilicity., Plechanovova A, Byun Y, Alquicer G, Skultetyova L, Mlcochova P, Nemcova A, Kim HJ, Navratil M, Mease RC, Lubkowski J, Pomper MG, Konvalinka J, Rulisek L, Barinka C, J Med Chem. 2011 Sep 19. PMID:21923190
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (3sjx.pdb1.gz) 506 Kb
  • LPC: Ligand-Protein Contacts for 3SJX
  • CSU: Contacts of Structural Units for 3SJX
  • Structure Factors (1842 Kb)
  • Retrieve 3SJX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SJX from S2C, [Save to disk]
  • Re-refined 3sjx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SJX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SJX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SJX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sjx] [3sjx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3SJX
  • Community annotation for 3SJX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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