3SKU	Viral Protein Protein Binding	date	Jun 23, 2011
title	Herpes Simplex Virus Glycoprotein D Bound To The Human Recep Nectin-1
authors	P.Di Giovine, E.C.Settembre, A.K.Bhargava, M.A.Luftig, H.Lou, G.H R.J.Eisenberg, C.Krummenacher, A.Carfi
compound		source
Molecule: Glycoprotein D Chain: A, B, C Fragment: Unp Residues 26-310 Engineered: Yes		Organism_scientific: Human Herpesvirus 1 Organism_common: Hhv-1 Organism_taxid: 10298 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
Molecule: Poliovirus Receptor-Related Protein 1 Chain: E, D, F Fragment: Unp Residues 31-345 Synonym: Herpes Virus Entry Mediator C, Herpesvirus Entry M Hvec, Herpesvirus Ig-Like Receptor, Higr, Nectin-1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pvrl1, Hvec, Prr1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: P 32 2 1	R_factor 0.266 R_Free 0.287
crystal cell	length a length b length c angle alpha angle beta angle gamma 188.003 188.003 185.004 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	4.00 Å
ligand	BMA, NAG	enzyme
Gene Ontology	Chain Function Process Component A, C, B F, D, E
Primary reference	Structure of herpes simplex virus glycoprotein d bound to the human receptor nectin-1., Di Giovine P, Settembre EC, Bhargava AK, Luftig MA, Lou H, Cohen GH, Eisenberg RJ, Krummenacher C, Carfi A, PLoS Pathog. 2011 Sep;7(9):e1002277. Epub 2011 Sep 29. PMID:21980294

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (430 Kb) [Save to disk] Biological Unit Coordinates (3sku.pdb1.gz) 143 Kb Biological Unit Coordinates (3sku.pdb2.gz) 140 Kb Biological Unit Coordinates (3sku.pdb3.gz) 143 Kb LPC: Ligand-Protein Contacts for 3SKU CSU: Contacts of Structural Units for 3SKU Structure Factors (451 Kb) Retrieve 3SKU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SKU from S2C, [Save to disk] Re-refined 3sku structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3SKU in 3D

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Visual 3D analysis of 3SKU

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3SKU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3sku_E] [3sku_A] [3sku_F] [3sku_B] [3sku] [3sku_C] [3sku_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3SKU: [IG_like] [IGv ] by SMART

Other resources with information on 3SKU

Community annotation for 3SKU at PDBWiki (http://pdbwiki.org)

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