3SLJ Protein Transport date Jun 24, 2011
title Pre-Cleavage Structure Of The Autotransporter Espp - N1023a
authors T.B.Barnard, N.Noinaj, N.C.Easley, A.J.Kuszak, S.K.Buchanan
compound source
Molecule: Serine Protease Espp
Chain: A
Fragment: Autotransporter Protein Espp Translocator (Unp Re 999-1300);
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83334
Strain: O157:H7
Gene: Eco57pm78, Espp, L7020
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: T7 Express
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrc99a
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.142 122.027 123.641 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.48 Å
ligand C8E enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular Basis for the Activation of a Catalytic Asparagine Residue in a Self-Cleaving Bacterial Autotransporter., Barnard TJ, Gumbart J, Peterson JH, Noinaj N, Easley NC, Dautin N, Kuszak AJ, Tajkhorshid E, Bernstein HD, Buchanan SK, J Mol Biol. 2011 Nov 7. PMID:22094314
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (3slj.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3SLJ
  • CSU: Contacts of Structural Units for 3SLJ
  • Structure Factors (209 Kb)
  • Retrieve 3SLJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SLJ from S2C, [Save to disk]
  • Re-refined 3slj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SLJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SLJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SLJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3slj_A] [3slj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SLJ: [Autotransporter ] by SMART
  • Other resources with information on 3SLJ
  • Community annotation for 3SLJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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