3SOD Oxidoreductase (Superoxide Acceptor) date Jun 26, 1990
title Changes In Crystallographic Structure And Thermostability Of A Cu,Zn Superoxide Dismutase Mutant Resulting From The Removal Of Buried Cysteine
authors D.E.Mcree, S.M.Redford, E.D.Getzoff, J.R.Lepock, R.A.Hallewell, J.A.Tainer
compound source
Molecule: Copper,Zinc Superoxide Dismutase
Chain: O, Y, G, B
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.500 89.400 70.500 90.00 95.70 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ACE, CU, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1OEZ, 1SXZ
Gene
Ontology
ChainFunctionProcessComponent
O, G, Y, B


Primary referenceChanges in crystallographic structure and thermostability of a Cu,Zn superoxide dismutase mutant resulting from the removal of a buried cysteine., McRee DE, Redford SM, Getzoff ED, Lepock JR, Hallewell RA, Tainer JA, J Biol Chem 1990 Aug 25;265(24):14234-41. PMID:2387847
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3sod.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3sod.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3SOD
  • CSU: Contacts of Structural Units for 3SOD
  • Likely Quarternary Molecular Structure file(s) for 3SOD
  • Structure Factors (141 Kb)
  • Retrieve 3SOD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SOD from S2C, [Save to disk]
  • View 3SOD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SOD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SOD, from MSDmotif at EBI
  • Genome occurence of 3SOD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3sodo_, region O [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3sod_O] [3sod] [3sod_Y] [3sod_B] [3sod_G]
  • SWISS-PROT database: [P00442]
  • Domain organization of [SODC_BOVIN] by SWISSPFAM
  • Other resources with information on 3SOD
  • Community annotation for 3SOD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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