3SPL	Hydrolase Dna	date	Jul 02, 2011
title	Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Amp
authors	Y.Gong, D.Zhu, J.Ding, C.Dou, X.Ren, T.Jiang, D.Wang
compound		source
Molecule: Aprataxin-Like Protein Chain: A, B, C, D Fragment: Unp Residues 33-232 Synonym: Hnt3 Protein, Hit Family Protein 3 Engineered: Yes Mutation: Yes		Organism_scientific: Schizosaccharomyces Pombe Organism_common: Fission Yeast Organism_taxid: 284812 Strain: Atcc 38366 972 Gene: Hnt3, Spcc18.09c Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Dna (5'-D(Tpaptptpcpcpgpaptpapgptpgp 3'); Chain: E, G Engineered: Yes Other_details: Short Strand Of Double-Stranded Dna		Synthetic: Yes Other_details: Dna Oligonucleotides Were Synthesized From S Sangon Biotechnology Company (Shanghai, China);
Molecule: Dna (5'- D(Gptpcpapcptpaptpcpgpgpapaptpgpapg)-3'); Chain: F, H Engineered: Yes Other_details: Long Strand Of Double-Stranded Dna		Synthetic: Yes Other_details: Dna Oligonucleotides Were Synthesized From S Sangon Biotechnology Company (Shanghai, China)
symmetry	Space Group: H 3 2	R_factor 0.176 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 220.956 220.956 135.154 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	AMP, SO4, ZN	enzyme
Primary reference	Crystal structures of aprataxin ortholog Hnt3 reveal the mechanism for reversal of 5'-adenylated DNA., Gong Y, Zhu D, Ding J, Dou CN, Ren X, Gu L, Jiang T, Wang DC, Nat Struct Mol Biol. 2011 Oct 9;18(11):1297-9. doi: 10.1038/nsmb.2145. PMID:21984208

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk] Biological Unit Coordinates (3spl.pdb1.gz) 88 Kb Biological Unit Coordinates (3spl.pdb2.gz) 88 Kb LPC: Ligand-Protein Contacts for 3SPL CSU: Contacts of Structural Units for 3SPL Structure Factors (1132 Kb) Retrieve 3SPL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3SPL from S2C, [Save to disk] Re-refined 3spl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3SPL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3spl_H] [3spl_G] [3spl_C] [3spl_D] [3spl_F] [3spl_E] [3spl] [3spl_A] [3spl_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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