3SYL Chaperone date Jul 18, 2011
title Crystal Structure Of The Aaa+ Protein Cbbx, Native Structure
authors O.Mueller-Cajar, M.Stotz, P.Wendler, F.U.Hartl, A.Bracher, M.Haye
compound source
Molecule: Protein Cbbx
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Strain: Kd131 Kctc 12085
Gene: Cbbx, Rskd131_2679
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phue
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.128 93.141 106.102 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand SO4 enzyme
Gene RSKD131
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and function of the AAA+ protein CbbX, a red-type Rubisco activase., Mueller-Cajar O, Stotz M, Wendler P, Hartl FU, Bracher A, Hayer-Hartl M, Nature. 2011 Nov 2;479(7372):194-9. doi: 10.1038/nature10568. PMID:22048315
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3syl.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (3syl.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 3SYL
  • CSU: Contacts of Structural Units for 3SYL
  • Structure Factors (235 Kb)
  • Retrieve 3SYL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3SYL from S2C, [Save to disk]
  • Re-refined 3syl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3SYL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3SYL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3SYL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3syl_A] [3syl] [3syl_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3SYL: [AAA ] by SMART
  • Other resources with information on 3SYL
  • Community annotation for 3SYL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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