3T2I Hydrolase date Jul 22, 2011
title Tetragonal Thermolysin In The Presence Of Sarcosine
authors J.Cahn, N.S.Hti Lar Seng, D.Juers
compound source
Molecule: Thermolysin
Chain: E
Synonym: Thermostable Neutral Proteinase
Ec: 3.4.24.27
Organism_scientific: Bacillus Thermoproteolyticus
Organism_taxid: 1427
symmetry Space Group: P 41 21 2
R_factor 0.173 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.346 96.346 105.875 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CA, CL, DMS, NA, SAR, ZN enzyme Hydrolase E.C.3.4.24.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
E


Primary referenceThe use of trimethylamine N-oxide as a primary precipitating agent and related methylamine osmolytes as cryoprotective agents for macromolecular crystallography., Marshall H, Venkat M, Hti Lar Seng NS, Cahn J, Juers DH, Acta Crystallogr D Biol Crystallogr. 2012 Jan;68(Pt 1):69-81. Epub 2011, Dec 9. PMID:22194335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3t2i.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 3T2I
  • CSU: Contacts of Structural Units for 3T2I
  • Structure Factors (754 Kb)
  • Retrieve 3T2I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3T2I from S2C, [Save to disk]
  • Re-refined 3t2i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3T2I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3T2I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3T2I, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3t2i_E] [3t2i]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3T2I
  • Community annotation for 3T2I at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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