3T9K	Protein Transport	date	Aug 03, 2011
title	Crystal Structure Of Acap1 C-Portion Mutant S554d Fused With Beta1 Peptide
authors	F.Sun, X.Pang, K.Zhang, J.Ma, Q.Zhou
compound		source
Molecule: Arf-Gap With Coiled-Coil, Ank Repeat And Ph Domai Containing Protein 1,Peptide From Integrin Beta-1; Chain: A, B Synonym: Centaurin-Beta-1,Cnt-B1,Fibronectin Receptor Subun Glycoprotein Iia,Gpiia,Vla-4 Subunit Beta; Engineered: Yes Mutation: Yes Other_details: Fusion Protein Of Acap1 C-Portion Mutant S55 Residues 378-740 From Q15027), Linker (Gssnsgsnsg), Peptide Integrin Beta-1 (Unp Residues 758-769 From P05556)		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Acap1, Centb1, Kiaa0050, Itgb1, Fnrb, Mdf2, Msk12 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p-1
symmetry	Space Group: P 21 21 2	R_factor 0.189 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 108.258 164.871 41.665 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	SO4, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Mechanistic insights into regulated cargo binding by ACAP1., Bai M, Pang X, Lou J, Zhou Q, Zhang K, Ma J, Li J, Sun F, Hsu V, J Biol Chem. 2012 May 29. PMID:22645133

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk] Biological Unit Coordinates (3t9k.pdb1.gz) 93 Kb Biological Unit Coordinates (3t9k.pdb2.gz) 88 Kb LPC: Ligand-Protein Contacts for 3T9K CSU: Contacts of Structural Units for 3T9K Structure Factors (497 Kb) Retrieve 3T9K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3T9K from S2C, [Save to disk] Re-refined 3t9k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3T9K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3T9K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3T9K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3t9k_B] [3t9k_A] [3t9k] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3T9K: [ANK] [ArfGap ] by SMART

Other resources with information on 3T9K

Community annotation for 3T9K at PDBWiki (http://pdbwiki.org)

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