3TD9 Transport Protein date Aug 10, 2011
title Crystal Structure Of A Leucine Binding Protein Livk (Tm1135) Thermotoga Maritima Msb8 At 1.90 A Resolution
authors Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Branched Chain Amino Acid Abc Transporter, Peripl Amino Acid-Binding Protein;
Chain: A
Fragment: Unp Residues 21-370
Engineered: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Gene: Tm1135, Tm_1135
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hk100
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Mh2t7a
symmetry Space Group: C 2 2 21
R_factor 0.151 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.685 91.315 90.657 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand EDO, MSE, PHE, SO4 enzyme
Gene TM
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (3td9.pdb1.gz) 233 Kb
  • LPC: Ligand-Protein Contacts for 3TD9
  • CSU: Contacts of Structural Units for 3TD9
  • Structure Factors (3001 Kb)
  • Retrieve 3TD9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TD9 from S2C, [Save to disk]
  • Re-refined 3td9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TD9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TD9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TD9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3td9] [3td9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TD9
  • Community annotation for 3TD9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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