3TDT	Acyltransferase	date	May 06, 1998
title	Complex Of Tetrahydrodipicolinate N-Succinyltransferase With 6-Oxopimelate And Coenzyme A
authors	T.W.Beaman, J.S.Blanchard, S.L.Roderick
compound		source
Molecule: Tetrahydrodipicolinate N-Succinyltransferase Chain: A Synonym: Dapd Ec: 2.3.1.117 Engineered: Yes		Organism_scientific: Mycobacterium Bovis Organism_taxid: 1765 Cell_line: Bl21 Gene: Dapd Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a Expression_system_gene: Dapd
symmetry	Space Group: H 3	R_factor 0.152 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.000 96.000 72.300 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	26P, COA	enzyme	Transferase E.C.2.3.1.117 BRENDA
related structures	by homologous chain: 2TDT
Gene Ontology	Chain Function Process Component A
Primary reference	The conformational change and active site structure of tetrahydrodipicolinate N-succinyltransferase., Beaman TW, Blanchard JS, Roderick SL, Biochemistry 1998 Jul 21;37(29):10363-9. PMID:9671504

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (3tdt.pdb1.gz) 131 Kb LPC: Ligand-Protein Contacts for 3TDT CSU: Contacts of Structural Units for 3TDT Likely Quarternary Molecular Structure file(s) for 3TDT Retrieve 3TDT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3TDT from S2C, [Save to disk]

View 3TDT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3TDT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3TDT, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d3tdt__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3tdt_A] [3tdt] SWISS-PROT database: [P56220] Domain organization of [DAPD_MYCBO] by SWISSPFAM

Other resources with information on 3TDT

Community annotation for 3TDT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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