3TE3 Metal Transport date Aug 11, 2011
title Coiled-Coil Oligomerization Domain Of The Polycystin Transie Receptor Potential Channel Pkd2l1
authors D.A.Yernool, K.M.Molland
compound source
Molecule: Polycystic Kidney Disease 2-Like 1 Protein
Chain: A, B, C, D, E, F
Fragment: Unp Residues 699-737
Synonym: Polycystin-2 Homolog, Polycystin-2l1, Polycystin-L Polycystin-L1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkd2l1, Pkd2l, Pkdl
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21plyss
Expression_system_vector_type: Plasmind
Expression_system_plasmid: Pev-L8
symmetry Space Group: P 65 2 2
R_factor 0.253 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.634 74.634 185.791 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.69 Å
Primary referenceCrystal structure and characterization of coiled-coil domain of the transient receptor potential channel PKD2L1., Molland KL, Paul LN, Yernool DA, Biochim Biophys Acta. 2011 Dec 13. PMID:22193359
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (3te3.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (3te3.pdb2.gz) 16 Kb
  • CSU: Contacts of Structural Units for 3TE3
  • Structure Factors (177 Kb)
  • Retrieve 3TE3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TE3 from S2C, [Save to disk]
  • Re-refined 3te3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TE3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TE3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TE3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3te3_D] [3te3_F] [3te3] [3te3_A] [3te3_C] [3te3_B] [3te3_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TE3
  • Community annotation for 3TE3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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