3TG0 Hydrolase date Aug 16, 2011
title E. Coli Alkaline Phosphatase With Bound Inorganic Phosphate
authors E.Bobyr, J.K.Lassila, H.I.Wiersma-Koch, T.D.Fenn, J.J.Lee, I.Niko Hughes, K.O.Hodgson, D.C.Rees, B.Hedman, D.Herschlag
compound source
Molecule: Alkaline Phosphatase
Chain: A, B, C, D
Fragment: Unp Residues 23-471
Synonym: Apase
Ec: 3.1.3.1
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Phoa, B0383, Jw0374
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sm547
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pek-48
symmetry Space Group: P 1 21 1
R_factor 0.148 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.963 98.457 152.146 90.00 94.61 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand MG, PO4, ZN enzyme Hydrolase E.C.3.1.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • oxidoreductase activity, act...
  • hydrogenase (acceptor) activ...


  • Primary referenceHigh-resolution analysis of Zn(2+) coordination in the alkaline phosphatase superfamily by EXAFS and x-ray crystallography., Bobyr E, Lassila JK, Wiersma-Koch HI, Fenn TD, Lee JJ, Nikolic-Hughes I, Hodgson KO, Rees DC, Hedman B, Herschlag D, J Mol Biol. 2012 Jan 6;415(1):102-17. Epub 2011 Oct 28. PMID:22056344
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (597 Kb) [Save to disk]
  • Biological Unit Coordinates (3tg0.pdb1.gz) 300 Kb
  • Biological Unit Coordinates (3tg0.pdb2.gz) 295 Kb
  • LPC: Ligand-Protein Contacts for 3TG0
  • CSU: Contacts of Structural Units for 3TG0
  • Structure Factors (7573 Kb)
  • Retrieve 3TG0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TG0 from S2C, [Save to disk]
  • Re-refined 3tg0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TG0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TG0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TG0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tg0_B] [3tg0_A] [3tg0_C] [3tg0] [3tg0_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3TG0: [alkPPc ] by SMART
  • Other resources with information on 3TG0
  • Community annotation for 3TG0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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