3TH2	Hydrolase Hydrolase Inhibitor	date	Aug 18, 2011
title	Mg2+ Is Required For Optimal Folding Of The Gamma-Carboxyglu (Gla) Domains Of Vitamin K-Dependent Clotting Factors At Physiological Ca2+
authors	K.Vadivel, S.Agah, D.Cascio, K.Padmanabhan, S.P.Bajaj
compound		source
Molecule: Coagulation Factor Vii Light Chain Chain: L Synonym: Proconvertin, Serum Prothrombin Conversion Acceler Spca; Ec: 3.4.21.21		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Blood
Molecule: Coagulation Factor Vii Heavy Chain Chain: H Synonym: Proconvertin, Serum Prothrombin Conversion Acceler Spca; Ec: 3.4.21.21		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Blood
Molecule: Tissue Factor Chain: T Synonym: Tf, Coagulation Factor III, Thromboplastin		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Blood
symmetry	Space Group: P 21 21 21	R_factor 0.189 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.940 80.874 126.430 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.72 Å
ligand	BEN, BGC, CA, CGU, CL, FUC, MG, NA	enzyme	Hydrolase E.C.3.4.21.21 BRENDA
Gene Ontology	Chain Function Process Component H L T

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk] Biological Unit Coordinates (3th2.pdb1.gz) 107 Kb LPC: Ligand-Protein Contacts for 3TH2 CSU: Contacts of Structural Units for 3TH2 Structure Factors (1082 Kb) Retrieve 3TH2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3TH2 from S2C, [Save to disk] Re-refined 3th2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TH2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3TH2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3TH2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3th2] [3th2_H] [3th2_T] [3th2_L] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3TH2: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART

Other resources with information on 3TH2

Community annotation for 3TH2 at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---