3THR Transferase Transferase Inhibitor date Aug 19, 2011
title Crystal Structure Of Rat Native Liver Glycine N-Methyltransf Complexed With 5-Methyltetrahydrofolate Monoglutamate
authors Z.Luka, S.Pakhomova, L.V.Loukachevitch, M.E.Newcomer, C.Wagner
compound source
Molecule: Glycine N-Methyltransferase
Chain: A, B, C, D
Synonym: Folate-Binding Protein
Ec: 2.1.1.20
Organism_scientific: Rattus Norvegicus
Organism_common: Brown Rat,Rat,Rats
Organism_taxid: 10116
symmetry Space Group: P 1 21 1
R_factor 0.178 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.186 83.788 134.436 90.00 91.32 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACE, C2F, TAM enzyme Transferase E.C.2.1.1.20 BRENDA
note 3THR is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDifferences in folate-protein interactions result in differing inhibition of native rat liver and recombinant glycine N-methyltransferase by 5-methyltetrahydrofolate., Luka Z, Pakhomova S, Loukachevitch LV, Newcomer ME, Wagner C, Biochim Biophys Acta. 2011 Oct 20. PMID:22037183
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (3thr.pdb1.gz) 194 Kb
  • LPC: Ligand-Protein Contacts for 3THR
  • CSU: Contacts of Structural Units for 3THR
  • Structure Factors (490 Kb)
  • Retrieve 3THR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3THR from S2C, [Save to disk]
  • Re-refined 3thr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3THR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3THR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3THR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3thr_D] [3thr] [3thr_B] [3thr_C] [3thr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3THR
  • Community annotation for 3THR at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science