3THS Transferase Transferase Inhibitor date Aug 19, 2011
title Crystal Structure Of Rat Native Liver Glycine N-Methyltransf Complexed With 5-Methyltetrahydrofolate Pentaglutamate
authors Z.Luka, S.Pakhomova, L.V.Loukachevitch, M.E.Newcomer, C.Wagner
compound source
Molecule: Glycine N-Methyltransferase
Chain: A, B, C, D
Synonym: Folate-Binding Protein
Ec: 2.1.1.20
Organism_scientific: Rattus Norvegicus
Organism_common: Brown Rat,Rat,Rats
Organism_taxid: 10116

Molecule: 5-Methyltetrahydrofolate Pentaglutamate
Chain: E, F
Engineered: Yes

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.228 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
193.036 61.047 146.352 90.00 128.92 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 03O, ACE, BME, GGL, TAM enzyme Transferase E.C.2.1.1.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDifferences in folate-protein interactions result in differing inhibition of native rat liver and recombinant glycine N-methyltransferase by 5-methyltetrahydrofolate., Luka Z, Pakhomova S, Loukachevitch LV, Newcomer ME, Wagner C, Biochim Biophys Acta. 2011 Oct 20. PMID:22037183
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (3ths.pdb1.gz) 176 Kb
  • Biological Unit Coordinates (3ths.pdb2.gz) 4 Kb
  • Biological Unit Coordinates (3ths.pdb3.gz) 4 Kb
  • LPC: Ligand-Protein Contacts for 3THS
  • CSU: Contacts of Structural Units for 3THS
  • Structure Factors (341 Kb)
  • Retrieve 3THS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3THS from S2C, [Save to disk]
  • Re-refined 3ths structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3THS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3THS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3THS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ths_D] [3ths_C] [3ths_F] [3ths_B] [3ths] [3ths_E] [3ths_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3THS
  • Community annotation for 3THS at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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