3TIW	Protein Transport Ligase	date	Aug 22, 2011
title	Crystal Structure Of P97n In Complex With The C-Terminus Of
authors	P.Haenzelmann, H.Schindelin
compound		source
Molecule: Transitional Endoplasmic Reticulum Atpase Chain: A, B Fragment: Unp Residues 1-187 Synonym: Ter Atpase, 15s Mg(2+)-Atpase P97 Subunit, Valosin Containing Protein, Vcp; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vcp Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pproex_hta
Molecule: E3 Ubiquitin-Protein Ligase Amfr Chain: C, D Fragment: Unp Residues 622-640 Synonym: Autocrine Motility Factor Receptor, Isoform 2, Amf Isoform 2, Ring Finger Protein 45, Gp78; Ec: 6.3.2.- Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 32	R_factor 0.147 R_Free 0.171
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.240 70.240 74.820 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	CL	enzyme	Ligase E.C.6.3.2 BRENDA
note	3TIW is a representative structure
Primary reference	The Structural and Functional Basis of the p97/Valosin-containing Protein (VCP)-interacting Motif (VIM): MUTUALLY EXCLUSIVE BINDING OF COFACTORS TO THE N-TERMINAL DOMAIN OF p97., Hanzelmann P, Schindelin H, J Biol Chem. 2011 Nov 4;286(44):38679-90. Epub 2011 Sep 13. PMID:21914798

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk] Biological Unit Coordinates (3tiw.pdb1.gz) 63 Kb Biological Unit Coordinates (3tiw.pdb2.gz) 64 Kb LPC: Ligand-Protein Contacts for 3TIW CSU: Contacts of Structural Units for 3TIW Structure Factors (2000 Kb) Retrieve 3TIW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3TIW from S2C, [Save to disk] Re-refined 3tiw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TIW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3TIW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3TIW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3tiw_D] [3tiw] [3tiw_B] [3tiw_C] [3tiw_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3TIW: [CDC48_2] [CDC48_N ] by SMART

Other resources with information on 3TIW

Community annotation for 3TIW at PDBWiki (http://pdbwiki.org)

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