3TJ6	Protein Binding Toxin	date	Aug 23, 2011
title	Human Vinculin Head Domain (Vh1, Residues 1-258) In Complex Vinculin Binding Site Of The Surface Cell Antigen 4 (Sca4-V Residues 812-835) From Rickettsia Rickettsii
authors	H.Park, J.H.Lee, E.Gouin, P.Cossart, T.Izard
compound		source
Molecule: Vinculin Chain: A Synonym: Metavinculin Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vcl Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Antigenic Heat-Stable 120 Kda Protein Chain: B Fragment: Unp Residues 812-834 Synonym: 120 Kda Antigen, Protein Ps 120, Ps120 Engineered: Yes		Organism_scientific: Rickettsia Rickettsii Organism_taxid: 452659 Strain: Iowa Gene: Rriowa_0797 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 21 3	R_factor 0.193 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 141.373 141.373 141.373 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.76 Å
Gene	RRIOWA
Gene Ontology	Chain Function Process Component A
Primary reference	The Rickettsia surface cell antigen 4 applies mimicry to bind to and activate vinculin., Park H, Lee JH, Cossart P, Gouin E, Izard T, J Biol Chem. 2011 Aug 13. PMID:21841197

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk] Biological Unit Coordinates (3tj6.pdb1.gz) 92 Kb Biological Unit Coordinates (3tj6.pdb2.gz) 273 Kb CSU: Contacts of Structural Units for 3TJ6 Structure Factors (253 Kb) Retrieve 3TJ6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3TJ6 from S2C, [Save to disk] Re-refined 3tj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TJ6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3TJ6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3TJ6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3tj6_A] [3tj6_B] [3tj6] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3TJ6

Community annotation for 3TJ6 at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---