3TJP Transferase Transferase Inhibitor date Aug 24, 2011
title Crystal Structure Of Pi3k Gamma With N6-(3,4-Dimethoxyphenyl Morpholino-[4,5'-Bipyrimidine]-2',6-Diamine
authors M.S.Knapp, R.A.Elling, E.Ornelas
compound source
Molecule: Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Ca Subunit Gamma Isoform;
Chain: A
Fragment: Unp Residues 144-1102
Synonym: Pi3-Kinase Subunit Gamma, Pi3k-Gamma, Ptdins-3-Kin Subunit Gamma, Phosphatidylinositol-4,5-Bisphosphate 3-Kina Catalytic Subunit Gamma, Ptdins-3-Kinase Subunit P110-Gamma Pi3k;
Ec: 2.7.1.153
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3cg
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
symmetry Space Group: C 1 2 1
R_factor 0.210 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.145 67.395 106.180 90.00 96.49 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 13K, SO4 BindingDB enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (285 Kb) [Save to disk]
  • Biological Unit Coordinates (3tjp.pdb1.gz) 279 Kb
  • LPC: Ligand-Protein Contacts for 3TJP
  • CSU: Contacts of Structural Units for 3TJP
  • Structure Factors (1375 Kb)
  • Retrieve 3TJP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TJP from S2C, [Save to disk]
  • Re-refined 3tjp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3TJP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3TJP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TJP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tjp_A] [3tjp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3TJP: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
    • Other resources with information on 3TJP
  • Community annotation for 3TJP at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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