3TN7 Oxidoreductase date Sep 01, 2011
title Crystal Structure Of Short-Chain Alcohol Dehydrogenase From Hyperthermophilic Archaeon Thermococcus Sibiricus Complexed Hydroxy-Nadp
authors K.M.Boyko, K.M.Polyakov, E.Y.Bezsudnova, T.N.Stekhanova, V.M.Gum A.V.Mardanov, N.V.Ravin, K.G.Skryabin, M.V.Kovalchuk, V.O.Popov
compound source
Molecule: Short-Chain Alcohol Dehydrogenase
Chain: A, B
Engineered: Yes
Organism_scientific: Thermococcus Sibiricus
Organism_taxid: 604354
Strain: Mm 739 Dsm 12597
Gene: Tsib_0319
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta-Gami De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: C 1 2 1
R_factor 0.146 R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.180 55.500 82.770 90.00 124.53 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand GOL, NJP enzyme
Gene TSIB
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insight into the molecular basis of polyextremophilicity of short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Thermococcus sibiricus., Bezsudnova EY, Boyko KM, Polyakov KM, Dorovatovskiy PV, Stekhanova TN, Gumerov VM, Ravin NV, Skryabin KG, Kovalchuk MV, Popov VO, Biochimie. 2012 Dec;94(12):2628-38. doi: 10.1016/j.biochi.2012.07.024. Epub 2012 , Aug 5. PMID:22885278
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (3tn7.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 3TN7
  • CSU: Contacts of Structural Units for 3TN7
  • Structure Factors (814 Kb)
  • Retrieve 3TN7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TN7 from S2C, [Save to disk]
  • Re-refined 3tn7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TN7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TN7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TN7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tn7_A] [3tn7_B] [3tn7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TN7
  • Community annotation for 3TN7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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