3TQI Ligase date Sep 09, 2011
title Structure Of The Gmp Synthase (Guaa) From Coxiella Burnetii
authors M.C.Franklin, J.Cheung, M.Rudolph, M.Cassidy, E.Gary, F.Burshteyn
compound source
Molecule: Gmp Synthase [Glutamine-Hydrolyzing]
Chain: A, B, C, D
Synonym: Gmp Synthetase, Glutamine Amidotransferase
Ec: 6.3.5.2
Engineered: Yes
Organism_scientific: Coxiella Burnetii
Organism_taxid: 777
Strain: Rsa 493 Nine Mile Phase I
Gene: Cbu_1341, Guaa
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 1 21 1
R_factor 0.245 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.913 143.953 107.885 90.00 97.66 90.00
method X-Ray Diffractionresolution 2.84 Å
ligand
enzyme Ligase E.C.6.3.5.2 BRENDA
Gene CBU
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural Genomics for Drug Design against the Pathogen Coxiella burnetii., Franklin MC, Cheung J, Rudolph MJ, Burshteyn F, Cassidy M, Gary E, Hillerich B, Yao ZK, Carlier PR, Totrov M, Love JD, Proteins. 2015 Jun 1. doi: 10.1002/prot.24841. PMID:26033498
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (614 Kb) [Save to disk]
  • Biological Unit Coordinates (3tqi.pdb1.gz) 305 Kb
  • Biological Unit Coordinates (3tqi.pdb2.gz) 305 Kb
  • Biological Unit Coordinates (3tqi.pdb3.gz) 605 Kb
  • CSU: Contacts of Structural Units for 3TQI
  • Structure Factors (2536 Kb)
  • Retrieve 3TQI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3TQI from S2C, [Save to disk]
  • Re-refined 3tqi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3TQI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3TQI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3TQI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3tqi] [3tqi_D] [3tqi_B] [3tqi_A] [3tqi_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3TQI
  • Community annotation for 3TQI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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