3TSO	Protein Transport	date	Sep 13, 2011
title	Structure Of The Cancer Associated Rab25 Protein In Complex
authors	S.Oda, P.Y.Lall, M.W.Mccaffrey, A.R.Khan
compound		source
Molecule: Ras-Related Protein Rab-25 Chain: A, B Fragment: Unp Residues 7-180 Synonym: Catx-8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab25, Catx8 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rab11 Family-Interacting Protein 2 Chain: C, D Fragment: Unp Residues 440-512 Synonym: Rab11-Fip2, Nrip11 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab11fip2, Kiaa0941 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor 0.199 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.310 64.210 65.940 113.25 107.24 99.46
method	X-Ray Diffraction	resolution	1.80 Å
ligand	GNP, GOL, MG, PO4	enzyme
Gene Ontology	Chain Function Process Component A, B D, C

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (3tso.pdb1.gz) 78 Kb LPC: Ligand-Protein Contacts for 3TSO CSU: Contacts of Structural Units for 3TSO Structure Factors (710 Kb) Retrieve 3TSO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3TSO from S2C, [Save to disk] Re-refined 3tso structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3TSO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3TSO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3TSO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3tso_C] [3tso_A] [3tso_B] [3tso] [3tso_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3TSO: [RAB ] by SMART

Other resources with information on 3TSO

Community annotation for 3TSO at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---